Making sense of your gene expression data with Cytoscape

Making sense of your gene expression data with Cytoscape, available at $49.99, has an average rating of 4.5, with 17 lectures, 4 quizzes, based on 36 reviews, and has 412 subscribers.

You will learn about What Cytoscape is How to use Cytoscape to visualize networks How to make beautiful network models Visualizing your own data Make a video of your network with CyAnimator Integrate R and Cytoscape This course is ideal for individuals who are Biomedical scientists that want to make sense of gene expression data or Scientist that need to generate beautiful pictures for presentations It is particularly useful for Biomedical scientists that want to make sense of gene expression data or Scientist that need to generate beautiful pictures for presentations.

Enroll now: Making sense of your gene expression data with Cytoscape

Summary

Title: Making sense of your gene expression data with Cytoscape

Price: $49.99

Average Rating: 4.5

Number of Lectures: 17

Number of Quizzes: 4

Number of Published Lectures: 17

Number of Published Quizzes: 4

Number of Curriculum Items: 21

Number of Published Curriculum Objects: 21

Original Price: $19.99

Quality Status: approved

Status: Live

What You Will Learn

What Cytoscape is

How to use Cytoscape to visualize networks

How to make beautiful network models

Visualizing your own data

Make a video of your network with CyAnimator

Integrate R and Cytoscape

Who Should Attend

Biomedical scientists that want to make sense of gene expression data

Scientist that need to generate beautiful pictures for presentations

Target Audiences

Biomedical scientists that want to make sense of gene expression data

Scientist that need to generate beautiful pictures for presentations

Have you ever gotten a large list of genes and wondered how to make sense of it? If so, you are not alone, and this course is for you. Big (OMICs) data is increasingly being used to drive biomedical science, but representing your data in a visual and easy to understand way is an art. In this course, you will learn how to use Cytoscape to make graphical representations of biological data.

Cytoscape is a free, open-source network visualization tool. In this course, I share tips and techniques I have spent years learning to take you from a Cytoscape Zero to a Cytoscape Hero in an hour. We cover everything from installing Cytoscape, to using Cytoscape to make sense of big gene lists, adjusting your network styles and layouts to make meaningful network models that capture gene interactions and mapping your own data onto these networks for next-level data visualization. In the bonus lectures, we integrate R and Cytoscape.

This course is aimed at biomedical researchers that need to analyse gene/ protein expression data or anyone that would like to learn how to use Cytoscape. This course requires a basic understanding of biology and biological pathways, but no prior programming knowledge is necessary to follow this course.

Course Curriculum

Chapter 1: Introduction

Lecture 1: Introduction

Chapter 2: Getting started with Cytoscape

Lecture 1: Getting started with Cytoscape

Lecture 2: Downloading Cytoscape

Lecture 3: Your first network

Lecture 4: Visualizing experimental data with your network

Chapter 3: Network layouts and analysis

Lecture 1: Network analysis and layout

Lecture 2: Network analysis and layout

Lecture 3: Network expansion with regulatory information

Chapter 4: Making sense of gene lists

Lecture 1: Making sense of gene lists

Lecture 2: Identifying GO pathways in a gene list

Lecture 3: Mapping experimental data onto a pathway

Chapter 5: Animating your networks

Lecture 1: Animating your networks

Lecture 2: Network animation and recording

Chapter 6: Course summary

Lecture 1: Course summary

Chapter 7: Bonus material: Integrating R and Cytoscape

Lecture 1: Introduction

Lecture 2: Mapping data onto Wikipathways with RCy3

Lecture 3: Making a new network with R

Instructors

Melinda Barkhuizen, PhD, PMP
Neuroscience PhD, PMP and data puzzle solver

Rating Distribution

1 stars: 1 votes

2 stars: 0 votes

3 stars: 9 votes

4 stars: 9 votes

5 stars: 17 votes

Frequently Asked Questions

How long do I have access to the course materials?

You can view and review the lecture materials indefinitely, like an on-demand channel.

Can I take my courses with me wherever I go?

Definitely! If you have an internet connection, courses on Udemy are available on any device at any time. If you don’t have an internet connection, some instructors also let their students download course lectures. That’s up to the instructor though, so make sure you get on their good side!